2023 User Guide

• About Our Service
• DiCOS Account
  • Apply for a DiCOS Group Account
  • DiCOS User Account
  • Apply for a DiCOS Account
    • Step 1: Sign Up with Your Personal Information
      • Non-AS Users
      • AS Users with Academia Sinica Single-Sign-On(SSO)
    • Step 2: Confirm your e-mail address
      • Non-AS Users
      • AS Users with Academia Sinica Single-Sign-On(SSO)
    • Step 3: PI’s approval
    • Step 4: Start to use DiCOS services
  • Password and Profile Modification & Group Change
  • DiCOS Account Lifetime
• Computing Resources
  • DiCOS Resources
    • CPU Resources
    • GPU Resources
• Storage and Data Transfer
  • Different Storage Types in DiCOS
    • Cloud Storage (Ceph)
    • CernVM-FS (CVMFS)
    • DiCOSBox
  • User Spaces in DiCOS System
    • DiCOS UI Home (NFS)
    • DiCOSBox
      • 1. Web Interface
      • 2. User Interface Node & Data Transfer Node
  • Group Spaces
    • Group Directory (Ceph)
  • Data Transfer Data Endpoints
    • scp (command line)
    • FileZilla™ (Windows™/MacOS™/Linux)
    • MobaXterm™ (Windows™)
    • WinSCP™ (Windows™)
• Slurm Batch System
  • Slurm User Interfaces (UIs)
  • Slurm Resources and Queues
    • Slurm Resources
    • Slurm Partitions (Queues)
    • Slurm Quality of Service (QoS)
  • System Topography
  • Slurm Software
    • environment-modules
    • Software Repository - CVMFS
    • To find more information of our available softwares, please check
  • Slurm Tutorials
  • On Site Slurm Documents
  • Request for Specific Software Installation
• DiCOSApps
  • DiCOSApp Introduction
    • Use DiCOSApp
    • CryoEM Specific APPs
    • Jupyter Notebooks
    • RELION Job Configuration
      • What’s the ideal MPI number and thread number with current RELION APP?
      • What’s the ideal MPI number and thread number with Premium RELION v100 app?
      • What if RELION encounters error?
  • DiCOSApp Data Handling
    • 1. User Home space
    • 2. Group space
    • 3. DiCOSBOX(Cloud storage) space
    • 4. CryoEM group space (CryoEM user only)
    • Data Transfer Endpoint
  • Restore your DiCOSApp Instance
  • Specific Software Installation
• Software Use Cases
  • Slurm
  • DiCOSApp
  • Comprehensive Cases
• Frequent Asked Questions (FAQ)
  • General
    • How could I know the computing environment (including the library, compiler, etc.) of DiCOS ?
    • How to use the Command Line Interface in DiCOS?
    • When I login in dicos-ui04.grid.sinica.edu.tw, I got port: 22 connection denial. Why?
    • How to reset my DiCOS password if I forget it?
  • DiCOS Account
    • I could login in dicos-ui04.grid.sinica.edu.tw with my account yesterday, but I could not login in today with the same credential. Why?
  • DiCOS Job System
    • When I use dicos ddm download command, it failed with the following messages: [2022-04-12 03:35:31,188 ERROR] Failed to download. What happened?
    • How can I debug the jobs submitted by dicos job submit? Could I have more information on my jobs?
  • Slurm
    • How do I know the current usage/vacancy of specific machine of slurm?
    • How could I use python3? What should I do if I would like to install some python packages from pip?
    • I encounter an error when I compile my CUDA code on slurm-ui01. The error message is cannot open source file “cuda_runtime_api.h”. Could you help me solve this problem?
    • How to use nvcc in slurm? Could you give me some instructions?
  • DiCOSApp
    • How to get a CryoSPARC™ license?
    • Why I cannot click the launch button of specific DiCOSApp?
    • What happened that I cannot launch specific DiCOSApp even if the launch button is clickable?
    • Recently, I started a CryoSPARC™ DiCOSApp instance, but I forget the account and password setup by me when I started CryoSPARC™ App. How should I do?
    • How to do plugins installation in JupyterLab of DiCOSApp?
• Publications and Acknowledgement
  • Copyright License
    • Work That Can be Freely Reused
    • Work That Cannot be Reused without Explicit Permission
  • Acknowledgement to ASGC
  • Citation Reference
  • Publicatin List
• Contact Us